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Asparagine
Natasha_4902
#1 Posted : Tuesday, August 11, 2020 7:58:19 PM
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Hi,

There was a question in the AAMC full length 4 about a reaction between asparagine acting as a nucleophile and phosphate. The answer said "The covalent intermediate will occur through the nucleophilic substitution by the side chain carboxyl of Asp14 at the electrophilic phosphorus atom in the substrate, displacing a leaving group."

Why would the carboxyl be the nucleophile and not the nitrogen of the asparagine side chain amide? I thought nitrogen was more nucleophilic than oxygen?

Thank you
INSTR_Katerina_102
#2 Posted : Wednesday, August 12, 2020 8:55:13 PM
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Hi Natasha,

Nitrogen does tend to be more nucleophilic than oxygen assuming that you have the same protonation state.

Here asparagine will not be deprotonated at this pH, and the nucleophilicity of the N will be significantly attenuated by resonance (as the N is more likely to have a partial postive charge than an oxygen in a resonance structure.

In contrast, the aspartate tends to be deprotonated at pH 7, augmenting its nucleophilicity through the build up of excess negative charge, and the resonance structure is less significant which also results in higher nucloephilicity.

This is very similar to the nucleophilic acyl substitution at the end of ChemOchem lecture 4 - carboxylic acids are slightly more reactive than amides, which are the least reactive carboxylic acid derivatives.

I hope this helps!

Katt
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