Welcome Guest Search | Active Topics |

Tag as favorite
Asparagine
Natasha_4902
#1 Posted : Tuesday, August 11, 2020 7:58:19 PM
Rank: Advanced Member

Groups: Registered
Joined: 6/8/2020
Posts: 62

Thanks: 0 times
Was thanked: 0 time(s) in 0 post(s)
Hi,

There was a question in the AAMC full length 4 about a reaction between asparagine acting as a nucleophile and phosphate. The answer said "The covalent intermediate will occur through the nucleophilic substitution by the side chain carboxyl of Asp14 at the electrophilic phosphorus atom in the substrate, displacing a leaving group."

Why would the carboxyl be the nucleophile and not the nitrogen of the asparagine side chain amide? I thought nitrogen was more nucleophilic than oxygen?

Thank you
INSTR_Katerina_102
#2 Posted : Wednesday, August 12, 2020 8:55:13 PM
Rank: Advanced Member

Groups: Registered
Joined: 6/24/2019
Posts: 250

Thanks: 0 times
Was thanked: 0 time(s) in 0 post(s)
Hi Natasha,

Nitrogen does tend to be more nucleophilic than oxygen assuming that you have the same protonation state.

Here asparagine will not be deprotonated at this pH, and the nucleophilicity of the N will be significantly attenuated by resonance (as the N is more likely to have a partial postive charge than an oxygen in a resonance structure.

In contrast, the aspartate tends to be deprotonated at pH 7, augmenting its nucleophilicity through the build up of excess negative charge, and the resonance structure is less significant which also results in higher nucloephilicity.

This is very similar to the nucleophilic acyl substitution at the end of ChemOchem lecture 4 - carboxylic acids are slightly more reactive than amides, which are the least reactive carboxylic acid derivatives.

I hope this helps!

Katt
Users browsing this topic
Guest
Tag as favorite
You cannot post new topics in this forum.
You cannot reply to topics in this forum.
You cannot delete your posts in this forum.
You cannot edit your posts in this forum.
You cannot create polls in this forum.
You cannot vote in polls in this forum.

Clean Slate theme by Jaben Cargman (Tiny Gecko)
Powered by YAF | YAF © 2003-2009, Yet Another Forum.NET
This page was generated in 0.078 seconds.